Likelihood Ratio Distribution
Hannah Van Wyk
2024-10-16 17:02:29
Last updated: 2024-10-16
Checks: 7 0
Knit directory: PODFRIDGE/
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Likelihood ratio summary plots
Plots showing the distribution of likelihood ratios relative to the cutoffs for each hypothesis type (cousins, full siblings, half siblings, parent_child, and second cousins). Here, we use the following cutoffs: false positive rate (FPR) of 0.01%, 0.1%, 1%, and a fixed cutoff of 1. Values that are not present in the plot correspond to a likelihood ratio of 0. 
Below, for each hypothesis (parent_child, full siblings, half siblings, cousins, and second cousins), we plot the proportion of pairs with a likelihood ratio exceeding the cutoffs for a false positive rate (FPR) of 0.01%, 0.1%, 1% and fixed cutoff of 1. Results are faceted by loci set and known relationship type on the x-axis.
sessionInfo()R version 4.4.1 (2024-06-14)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.4 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
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[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/New_York
tzcode source: system (glibc)
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
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